harissa.utils.plot_network#
- harissa.utils.plot_network(inter, pos, width=1.0, height=1.0, scale=1.0, names=None, vdict=None, tol=None, root=False, axes=None, nodes=None, n0=True, file=None, verb=False, fontsize=None, vcolor=None, nodesize=1.0, bend=0.14, bend_all=False, alpha=None, hide_isolated_genes=False, hide_stimulus_leaves=False)[source]#
Plot a gene regulatory network.
- Parameters:
hide_isolated_genes (bool) – Hide genes that have no neighbors.
hide_stimulus_leaves (bool) – Hide genes whose only neighbor is the stimulus.