harissa.simulation module#

harissa.simulation#

Simulation of the network model.

Modules#

base

Store simulations

ode

Perform simulations using the ODE model

pdmp

Perform simulations using the PDMP model

pdmp_fast

Perform simulations using the PDMP model - Fast version using Numba NB: This module takes time to compile (~8s) but is much more efficient, which is typically suited for large numbers of genes and/or cells