harissa.inference module#

harissa.inference#

Inference of the network model.

Functions#

harissa.inference.infer_kinetics(x, times, tol=1e-05, max_iter=100, verb=False)[source]#

Infer parameters a[0], …, a[m-1] and b of a Gamma-Poisson model with time-dependant a and constant b for a given gene at m time points.

Parameters:

• x (ndarray) – x[k] is the gene expression of cell k

• times (ndarray) – times[k] is the time point of cell k

harissa.inference.infer_proteins(x, a)[source]#

Estimate y directly from data.